PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400034430
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 225aa    MW: 25455.5 Da    PI: 7.1899
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400034430genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY65.39.9e-21167207140
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkver 40 
                           ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+ 
  PGSC0003DMP400034430 167 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCPVKKKVQL 207
                           58***************************99********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-19161207IPR003657WRKY domain
PROSITE profilePS5081117.224162206IPR003657WRKY domain
SuperFamilySSF1182903.92E-17164209IPR003657WRKY domain
SMARTSM007741.8E-16167218IPR003657WRKY domain
PfamPF031066.3E-16168207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEFTSLVDTS LDLNFRPLRV SDELPKQEVE SNFIGLGRDP VLPIKDETGN LMEELNRVNA  60
ENKKLTEMLT VMCQNYNSLR SQLTEYLSKQ NSSTSGADQD QNSDGSKKRK VENNNNEIVK  120
SSVQLLNSDS SSSDEDSSPN KPREEHIKTK TSRVYMRTEP SDTSLIVKDG YQWRKYGQKV  180
TRDNPSPRAY FKCSFAPTCP VKKKVQLILI SSTILEPNVQ VYSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6542910.0FJ654291.1 Solanum lycopersicum JA-induced WRKY protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341684.11e-141PREDICTED: probable WRKY transcription factor 40
SwissprotQ9SAH76e-55WRK40_ARATH; Probable WRKY transcription factor 40
TrEMBLM1BR801e-164M1BR80_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000510471e-141(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.15e-54WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]